Debian (or other Debian-based distributions, e.g. Ubuntu)
The following instructions have been found to work for Debian 7.2 Wheezy 64-bit.
Install all the necessary prerequisites (either as root or if you have set up sudo permissions by running visudo as root):
apt-get install subversion build-essential autoconf libnetcdf-dev libxml2-dev libproj-dev
Run subversion:
mkdir ~/AtlantisBuild
cd AtlantisBuild
svn co https://svnserv.csiro.au/svn/ext/atlantis/Atlantis/trunk/atlantisCompile and build:
cd atlantis
aclocal
autoheader
autoconf
automake -a
./configure
make
sudo make installTest Atlantis:
atlantisMerged -v