Climate in the biology file
Environmental Drivers for Movement and Spawning
The following parameters have been added to the biol.prm file to fill out environmental drivers of movement behaviour
Temperature and salinity effects on movement and spawning
After flagtempdepend insert
flagsaltdepend 0 0 = off, 1 = salinity preferences used
flagO2depend 0 0 = off, 1 = oxygen preferences used
Minimum and maximum tolerated temepratures have been in the file for a while, for movement and spawning of each age structured group (and eventually mobile invertebrates). The same is needed for maximum and minimum tolerated salinities
Minimum and maximum tolerated temperatures
FPS_min_move_temp 9.0
FPL_min_move_temp 4.0
FPO_min_move_temp 4.0
FVD_min_move_temp 4.0
FVV_min_move_temp 4.0
FVS_min_move_temp 13.0
FVT_min_move_temp 9.5
FVO_min_move_temp 4.0
FVB_min_move_temp 4.0
FMM_min_move_temp 4.0
FMN_min_move_temp 4.0
FBP_min_move_temp 4.0
FDD_min_move_temp 4.0
FDS_min_move_temp 4.0
FDB_min_move_temp 4.0
FDC_min_move_temp 4.0
FDO_min_move_temp 4.0
FDE_min_move_temp 4.0
FDF_min_move_temp 4.0
FDM_min_move_temp 4.0
FDP_min_move_temp 4.0
SHD_min_move_temp 4.0
SHC_min_move_temp 4.0
SHP_min_move_temp 4.0
SHB_min_move_temp 4.0
SHR_min_move_temp 4.0
SSK_min_move_temp 4.0
SB_min_move_temp 4.0
SP_min_move_temp 4.0
REP_min_move_temp 4.0
PIN_min_move_temp 4.0
WDG_min_move_temp 4.0
WHB_min_move_temp 4.0
WHS_min_move_temp 4.0
WHT_min_move_temp 4.0
FPS_max_move_temp 21.0
FPL_max_move_temp 30.0 Jack Mackeral would have max of 17.0
FPO_max_move_temp 30.0
FVD_max_move_temp 30.0
FVV_max_move_temp 30.0
FVS_max_move_temp 18.0
FVT_max_move_temp 30.0
FVO_max_move_temp 30.0
FVB_max_move_temp 30.0
FMM_max_move_temp 30.0
FMN_max_move_temp 30.0
FBP_max_move_temp 30.0
FDD_max_move_temp 30.0
FDS_max_move_temp 30.0
FDB_max_move_temp 30.0
FDC_max_move_temp 30.0
FDO_max_move_temp 7.0
FDE_max_move_temp 30.0
FDF_max_move_temp 30.0
FDM_max_move_temp 30.0
FDP_max_move_temp 30.0
SHD_max_move_temp 30.0
SHC_max_move_temp 30.0
SHP_max_move_temp 30.0
SHB_max_move_temp 30.0
SHR_max_move_temp 30.0
SSK_max_move_temp 30.0
SB_max_move_temp 30.0
SP_max_move_temp 30.0
REP_max_move_temp 30.0
PIN_max_move_temp 30.0
WDG_max_move_temp 30.0
WHB_max_move_temp 30.0
WHS_max_move_temp 30.0
WHT_max_move_temp 30.0
Minimum and maximum tolerated salinity
FPS_min_move_salt 0.0
FPL_min_move_salt 0.0
FPO_min_move_salt 0.0
FVD_min_move_salt 0.0
FVV_min_move_salt 0.0
FVS_min_move_salt 0.0
FVT_min_move_salt 0.0
FVO_min_move_salt 0.0
FVB_min_move_salt 0.0
FMM_min_move_salt 0.0
FMN_min_move_salt 0.0
FBP_min_move_salt 0.0
FDD_min_move_salt 0.0
FDS_min_move_salt 0.0
FDB_min_move_salt 0.0
FDC_min_move_salt 0.0
FDO_min_move_salt 0.0
FDE_min_move_salt 0.0
FDF_min_move_salt 0.0
FDM_min_move_salt 0.0
FDP_min_move_salt 0.0
SHD_min_move_salt 0.0
SHC_min_move_salt 0.0
SHP_min_move_salt 0.0
SHB_min_move_salt 0.0
SHR_min_move_salt 0.0
SSK_min_move_salt 0.0
SB_min_move_salt 0.0
SP_min_move_salt 0.0
REP_min_move_salt 0.0
PIN_min_move_salt 0.0
WDG_min_move_salt 0.0
WHB_min_move_salt 0.0
WHS_min_move_salt 0.0
WHT_min_move_salt 0.0
FPS_max_move_salt 40.0
FPL_max_move_salt 40.0
FPO_max_move_salt 40.0
FVD_max_move_salt 40.0
FVV_max_move_salt 40.0
FVS_max_move_salt 40.0
FVT_max_move_salt 40.0
FVO_max_move_salt 40.0
FVB_max_move_salt 40.0
FMM_max_move_salt 40.0
FMN_max_move_salt 40.0
FBP_max_move_salt 40.0
FDD_max_move_salt 40.0
FDS_max_move_salt 40.0
FDB_max_move_salt 40.0
FDC_max_move_salt 40.0
FDO_max_move_salt 40.0
FDE_max_move_salt 40.0
FDF_max_move_salt 40.0
FDM_max_move_salt 40.0
FDP_max_move_salt 40.0
SHD_max_move_salt 40.0
SHC_max_move_salt 40.0
SHP_max_move_salt 40.0
SHB_max_move_salt 40.0
SHR_max_move_salt 40.0
SSK_max_move_salt 40.0
SB_max_move_salt 40.0
SP_max_move_salt 40.0
REP_max_move_salt 40.0
PIN_max_move_salt 40.0
WDG_max_move_salt 40.0
WHB_max_move_salt 40.0
WHS_max_move_salt 40.0
WHT_max_move_salt 40.0
And for spawning
Minimum and maximum spawning temperatures
FPS_min_spawn_temp 14.0
FPL_min_spawn_temp 4.0
FPO_min_spawn_temp 4.0
FVD_min_spawn_temp 4.0
FVV_min_spawn_temp 4.0
FVS_min_spawn_temp 4.0
FVT_min_spawn_temp 22.0
FVB_min_spawn_temp 4.0
FVO_min_spawn_temp 4.0
FMM_min_spawn_temp 4.0
FMN_min_spawn_temp 4.0
FBP_min_spawn_temp 4.0
FDD_min_spawn_temp 4.0
FDS_min_spawn_temp 18.0
FDB_min_spawn_temp 4.0
FDC_min_spawn_temp 4.0
FDO_min_spawn_temp 4.0
FDE_min_spawn_temp 4.0
FDF_min_spawn_temp 4.0
FDM_min_spawn_temp 4.0
FDP_min_spawn_temp 4.0
SHD_min_spawn_temp 4.0
SHP_min_spawn_temp 4.0
SHB_min_spawn_temp 4.0
SHR_min_spawn_temp 4.0
SHC_min_spawn_temp 4.0
SSK_min_spawn_temp 4.0
SB_min_spawn_temp 4.0
SP_min_spawn_temp 4.0
REP_min_spawn_temp 4.0
PIN_min_spawn_temp 4.0
WDG_min_spawn_temp 4.0
WHB_min_spawn_temp 4.0
WHS_min_spawn_temp 4.0
WHT_min_spawn_temp 4.0
FPS_max_spawn_temp 21.0
FPL_max_spawn_temp 25.0
FPO_max_spawn_temp 25.0
FVD_max_spawn_temp 25.0
FVV_max_spawn_temp 25.0
FVS_max_spawn_temp 25.0
FVT_max_spawn_temp 26.0
FVB_max_spawn_temp 25.0
FVO_max_spawn_temp 25.0
FMM_max_spawn_temp 25.0
FMN_max_spawn_temp 25.0
FBP_max_spawn_temp 25.0
FDD_max_spawn_temp 25.0
FDS_max_spawn_temp 21.0
FDB_max_spawn_temp 25.0
FDC_max_spawn_temp 25.0
FDO_max_spawn_temp 25.0
FDE_max_spawn_temp 25.0
FDF_max_spawn_temp 25.0
FDM_max_spawn_temp 25.0
FDP_max_spawn_temp 25.0
SHD_max_spawn_temp 25.0
SHP_max_spawn_temp 25.0
SHB_max_spawn_temp 25.0
SHC_max_spawn_temp 25.0
SHR_max_spawn_temp 25.0
SSK_max_spawn_temp 25.0
SB_max_spawn_temp 25.0
SP_max_spawn_temp 25.0
REP_max_spawn_temp 25.0
PIN_max_spawn_temp 25.0
WDG_max_spawn_temp 25.0
WHB_max_spawn_temp 25.0
WHS_max_spawn_temp 25.0
WHT_max_spawn_temp 25.0
Minimum and maximum spawning salinities
FPS_min_spawn_salt 0.0
FPL_min_spawn_salt 0.0
FPO_min_spawn_salt 0.0
FVD_min_spawn_salt 0.0
FVV_min_spawn_salt 0.0
FVS_min_spawn_salt 0.0
FVT_min_spawn_salt 0.0
FVB_min_spawn_salt 0.0
FVO_min_spawn_salt 0.0
FMM_min_spawn_salt 0.0
FMN_min_spawn_salt 0.0
FBP_min_spawn_salt 0.0
FDD_min_spawn_salt 0.0
FDS_min_spawn_salt 0.0
FDB_min_spawn_salt 0.0
FDC_min_spawn_salt 0.0
FDO_min_spawn_salt 0.0
FDE_min_spawn_salt 0.0
FDF_min_spawn_salt 0.0
FDM_min_spawn_salt 0.0
FDP_min_spawn_salt 0.0
SHD_min_spawn_salt 0.0
SHP_min_spawn_salt 0.0
SHB_min_spawn_salt 0.0
SHR_min_spawn_salt 0.0
SHC_min_spawn_salt 0.0
SSK_min_spawn_salt 0.0
SB_min_spawn_salt 0.0
SP_min_spawn_salt 0.0
REP_min_spawn_salt 0.0
PIN_min_spawn_salt 0.0
WDG_min_spawn_salt 0.0
WHB_min_spawn_salt 0.0
WHS_min_spawn_salt 0.0
WHT_min_spawn_salt 0.0
FPS_max_spawn_salt 40.0
FPL_max_spawn_salt 40.0
FPO_max_spawn_salt 40.0
FVD_max_spawn_salt 40.0
FVV_max_spawn_salt 40.0
FVS_max_spawn_salt 40.0
FVT_max_spawn_salt 40.0
FVB_max_spawn_salt 40.0
FVO_max_spawn_salt 40.0
FMM_max_spawn_salt 40.0
FMN_max_spawn_salt 40.0
FBP_max_spawn_salt 40.0
FDD_max_spawn_salt 40.0
FDS_max_spawn_salt 40.0
FDB_max_spawn_salt 40.0
FDC_max_spawn_salt 40.0
FDO_max_spawn_salt 40.0
FDE_max_spawn_salt 40.0
FDF_max_spawn_salt 40.0
FDM_max_spawn_salt 40.0
FDP_max_spawn_salt 40.0
SHD_max_spawn_salt 40.0
SHP_max_spawn_salt 40.0
SHB_max_spawn_salt 40.0
SHC_max_spawn_salt 40.0
SHR_max_spawn_salt 40.0
SSK_max_spawn_salt 40.0
SB_max_spawn_salt 40.0
SP_max_spawn_salt 40.0
REP_max_spawn_salt 40.0
PIN_max_spawn_salt 40.0
WDG_max_spawn_salt 40.0
WHB_max_spawn_salt 40.0
WHS_max_spawn_salt 40.0
WHT_max_spawn_salt 40.0
Oxygen dependency
All groups now have a minimum tolerated oxygen level, so in addition to the existing invertebrate values the following also has to be added (insert after KO2LIM_BFD)
Minimum tolerated oxygen level for age structured groups (typically vertebrates)
FPS_min_O2 0.0
FPL_min_O2 0.0
FPO_min_O2 0.0
FVD_min_O2 0.0
FVV_min_O2 0.0
FVS_min_O2 0.0
FVT_min_O2 0.0
FVO_min_O2 0.0
FVB_min_O2 0.0
FMM_min_O2 0.0
FMN_min_O2 0.0
FBP_min_O2 0.0
FDD_min_O2 0.0
FDS_min_O2 0.0
FDB_min_O2 0.0
FDC_min_O2 0.0
FDO_min_O2 0.0
FDE_min_O2 0.0
FDF_min_O2 0.0
FDM_min_O2 0.0
FDP_min_O2 0.0
SHD_min_O2 0.0
SHC_min_O2 0.0
SHP_min_O2 0.0
SHB_min_O2 0.0
SHR_min_O2 0.0
SSK_min_O2 0.0
SB_min_O2 0.0
SP_min_O2 0.0
REP_min_O2 0.0
PIN_min_O2 0.0
WDG_min_O2 0.0
WHB_min_O2 0.0
WHS_min_O2 0.0
WHT_min_O2 0.0