Lecture Material
2022 Lectures (Summer School, Chile)
Day 1
Lecture_day01_P01_Atlantis_Chile.pdf
Lecture_day01_P02_Atlantis_Chile.pdf
Lecture_day01_P03_Atlantis_Chile.ppt
Day 2
Lecture_day02_P01_Atlantis_Chile.pdf
Lecture_day02_P02 - Atlantis example.pptx
Lecture_day02_P03_modelling_decisions.pdf
Day 3
Lecture_day03_P01_Atlantis_Chile.pdf
Lecture_day03_P02_Atlantis_Chile.pdf
Lecture_day03_P03_Atlantis_Tools.pdf
Day 4
2021 Lectures
Videos of the 2021 course are available from these links
Notes on Lectures
Lecture 1 - Standard Atlantis overview
Lecture 2 - SE Atlantis example
Lecture 3 - Installing code, working with SVN, compiling, running Atlantis (including using Docker)
2008-2009 Lectures
Theory and lecture heavy versions of teaching material that Beth used in 2008 and 2009
Lecture 1 - Intro Atlantis Modelling Concepts.ppt
Lecture 2 - Marine Ecology and Oceanography.ppt
Lecture 3 - Ecological Modelling.ppt
Lecture 4 - Resolution.ppt
Lecture 5 - Physics equations.ppt
Lecture 6 - Chemical equations.ppt
Lecture 7 - Primary Production.ppt
Lecture 8 - Biomass Pool Consumers.ppt
Lecture 9 - Vertebrates.ppt
Lecture 10 - Fisheries and Management.ppt
Lecture 11 - Socio-economics.ppt
Lecture 12 - Building Atlantis.ppt
Lecture 13 - Looking at Output.ppt
Lecture 14 - Running Atlantis.ppt
Lecture 15 - Main Loop.ppt
Seattle 2009 Teaching materials
The following is the teaching material that Isaac, Cam, and Peter used in Seattle, Sept 2009.
Includes slides, handouts, and lab demos.
Includes slides from Beth, Bec, Jason Link, Uwe Rosebrock, others:
AtlantisEcosysModelCourseSept2009.doc
Day1_0930_Ecosystem Models (Cam).ppt
Day1_1115_KaplanIntroTo_Atlantis_Sept_2009.ppt
Day1_1330_Kaplan_SEAustralia_Atlantis_Sept82009.ppt
Day1_1430_Horne_Atlantis_California_8Sep2009.ppt
Day1_1500_KaplanDay1_ITQAcidification_Sept2009.ppt
Day1_1545_GOC case study (Cam).ppt
Day1_1700_handout.doc
Day2_0915_Key modelling decisions (Cam).ppt
Day2_1045_KaplanFutureDevelopmentAtlantis2.ppt
Day2_1115_Atlantis Output.ppt
Day2_1145_Output visualization (Cam).ppt
Day2_1300_HandoutsPRM_CDF.doc
Day2_1300_KaplanAtlantisInputFiles.ppt
Day2_1430_ECCALbioparams.xls
Day3_0900_Handout_HowtoBuildanAtlantisModel_Feb18_2009.doc
Day3_0930_ThoughtExperiments.doc
Day3_1330_KaplanFitToHistory.ppt
Day3_1430_Ancillary tools (Cam).ppt
Day3_1630_KaplanCodeTour.ppt
ReadMe.txt
Admin.zip
Day2_1115_PeterOutputDemo.zip - currently not in the archive, but contact Beth to chase up a copy or an equivalent
Day2_1300_IsaacInputFiles.zip
Day3_1030_LabExercises.zip- currently not in the archive, but contact Beth to chase up a copy or an equivalent
Hobart/Europe 2011 teaching powerpoints
Teaching power points from Feb 2011 Workshop in Hobart. These are fairly short as its supposed to be more hands on.
LECTURE 1 - Atlantis2011.ppt
LECTURE 2 - Geometry 2011.ppt
LECTURE 3 - Physics 2011.ppt
LECTURE 4 - Biology 2011.ppt
LECTURE 5 - Fisheries_2011.ppt
LECTURE 6 - Running Atlantis.ppt
LECTURE 7 - Output Exploration.ppt
LECTURE 8 - Monitoring and assessments 2011.ppt
LECTURE 9 - Main loop and code 2011.ppt